platforma.bio
🖥️
Need a GUI for MiXCR? Try Platforma.bio for interactive, no-code analysis and visualization
🚀
platforma.bio
🖥️
Need a GUI for MiXCR? Try Platforma.bio for interactive, no-code analysis and visualization
🚀
platforma.bio
🖥️
Need a GUI for MiXCR? Try Platforma.bio for interactive, no-code analysis and visualization
🚀
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MiXCR
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    milaboratory/docs
    • About
    • Downloads
    • Guides
    • Docs
    • VDJ.online
    • Discussions
    • Github
    milaboratory/docs
    • About
      • Binary distributions
      • Using with Docker
      • Obtaining and using license key
      • First run
      • License
      • Support
        • MiLaboratories Human IG RNA Multiplex kit
        • MiLaboratories Human TCR RNA Multiplex kit
        • MiLaboratories Human TCR DNA Multiplex kit
        • SMARTer Human BCR IgG IgM H/K/L Profiling Kit
        • SMARTer Mouse TCR a/b Profiling Kit
        • Illumina Ampliseq TCR LR / iRepertoire
        • QIAseq Immune Repertoire TCR
        • Cellecta AIR RNA Human
        • Cellecta AIR DNA Human
        • Cellecta AIR RNA Human Full-length
        • Cellecta AIR RNA Mouse
        • AbHelix BCR
        • BioMed2
        • NEBNext Immune Sequencing
        • Targeted TCR UMI libraries
        • Targeted BCR Multiplex libraries
        • Targeted BCR UMI libraries
        • RNA-Seq data
        • Immunoglobulin lineage trees reconstruction
        • Comparative Benchmarking of MiXCR and other VDJ analysis tools
        • Custom reference library
        • Using IMGT library
        • B cell lineage tracing
        • Analysis overview
        • Presets
        • Mix-in options list
        • Built-in presets
        • Custom reference library
        • MiXCR quality controls
        • List of quality checks
        • Sequencing quality issues
        • Rep-Seq libraries quality issues
        • Non-targeted data quality issues
        • analyze
        • align
        • refineTagsAndSort
        • assemble
        • assemblePartial
        • assembleContigs
        • findAlleles
        • findShmTrees
        • downsample
        • extend
        • export
        • exportPretty
        • exportAirr
        • exportReadsForClones
        • exportShmTrees
        • exportReports
        • exportReportsTable
        • exportQc
        • exportPlots
        • exportPreset
        • exportTables
        • exportPreprocTables
        • exportClonesOverlap
        • assembleCells
        • mergeAlignments
        • overlapScatterPlot
        • postanalysis
        • buildLibrary
        • mergeLibrary
        • debugLibrary
        • qc
        • mixcr align
        • mixcr refineTagsAndSort
        • mixcr assemblePartial
        • mixcr extend
        • mixcr assemble
        • mixcr assembleContigs
        • mixcr findAlleles
        • mixcr findShmTrees
        • fasta
        • compile
        • debug
        • filter
        • format
        • fromFasta
        • fromPaddedFasta
        • inferPoints
        • merge
        • stat
        • tsv
        • parse
        • filter
        • tag-stat
        • export-fastq
        • correct
        • consensus
        • process-fastq
        • format-fastq
        • compress-sequence-set
        • Tag pattern
        • Input file name expansion
        • Samples table
        • Gene features and reference points
        • Translation rules
        • Mutations encoding
    • VDJ.online
    • Discussions
    • Github