mitool export-fastq

Export sequences from mic file into a FASTQ formatted file. Allows to export sequences with different tags into separate FASTQ files.

Usage:

mitool export-fastq [OPTIONS] SOURCE

SOURCE

Input *.mic file

Options:

-O <VALUE>

Tag names to output file names mapping (i.e. -OUMI=my_file.fastq.gz or -OR1=my_R1.fastq.gz)

-t, --header-tag <TEXT>

Will add the sequence and quality score lines of the corresponding tags to the header line of exported fastq records

-h, --help

Show this message and exit