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repseqio compile

Compiles a library into self-contained compiled library file, by embedding sequence information into "sequenceFragments" section.


repseqio compile [-f] [-s <length>] input.json[.gz] output.json[.gz]


-f, --force
Force overwrite of output file(s).
-s, --surrounding <length>
Length of surrounding sequences to include into library. Number of upstream and downstream nucleotides around V/D/J/C segments to embed into output library's "sequenceFragments" section. More nucleotides will be included, more surrounding sequences will be possible to request using gene features with offset (like JRegion(-12, +3)), at the same time size of output file will be greater. Default 30.