repseqio filter

Filters libraries and library records.

Usage:

repseqio filter [-f] \
    [--chain <chain>] \
    [--species <species>] \
    [--taxon-id <id>] \
    input_library.json[.gz] output_library.json[.gz]

-f, --force (default: false)

Force overwrite of output file(s).

-c, --chain

Chain pattern, regexp string, all genes with matching chain record will be collected.

-s, --species <species>

Species name, used in the same way as --taxon-id.

-t, --taxon-id <id>

Taxon id (filter multi-library file to leave single library for specified taxon id)